Application of next-generation sequencing technologies to conservation of wood-inhabiting fungi

Next-generation sequencing (NGS) has significantly increased knowledge of microbial communities and their distribution. However, it is still not common to apply NGS technology to microbial conservation. We sought to use NGS technologies to evaluate conservation strategies for wood-inhabiting fungi. Evaluating a deadwood experiment 3 years after it was established, we specifically examined which tree species combinations promoted the highest richness of wood-inhabiting fungi. Deadwood enrichment was an effective strategy and logs of 6 tree species, either those with the highest wood-inhabiting fungal α and γ diversity or those with the highest β diversity, maintained >1,000 operational taxonomic units (OTUs) spread over a wide range of taxonomic groups. In comparison, a conservation strategy based only on the results of sporocarp surveys yielded 591 OTUs. This result highlights the need to use NGS approaches to inform microbial conservation strategies. We also determined that 5 tree species with the highest saproxylic beetle γ diversity simultaneously conserved wood-inhabiting fungi. Apart from deadwood volume, we suggest data on deadwood quality and species also be included as indicators, especially for wood-inhabiting fungal diversity, and incorporated quickly in forest assessment and monitoring systems in Central Europe.     

Ecological benefits of the alley cropping agroforestry system in sensitive regions of Europe

Alley cropping is an agroforestry system that offers a promising land use alternative for the temperate zone. On the same field, the sustainable production of food and biomass is possible, while simultaneously, especially in marginal areas, the ecological function of the landscape can be improved. Thus, alley cropping corresponds with the increasing demand for renewable energy resources and for a specific adaptation to the predicted changes of climatic conditions within Central Europe.However, presently, little knowledge exists regarding the effects of alley cropping on the environment. In this study a literature survey was undertaken to provide an overview of the different ecological benefits arising from alley cropping systems within temperate Europe. Abiotic factors (nutrient cycle, microclimate), biotic factors (biodiversity) and the effects on the carbon cycle are discussed in detail.Summarising, the results showed that alley cropping may be an ecologically advantageous land use system for sustainable food and biomass production in comparison with conventional agricultural practices. As a very flexible, but low-input system, alley cropping can supply biomass resources in a sustainable way and at the same time provide ecological benefits.     

Development and Evaluation of a Regulatory Model for Pesticides in Flooded Applications

The pesticides in flooded applications model (PFAM) is a regulatory model for government agencies and others interested in estimating water concentrations of pesticides used in flooded agriculture applications such as rice paddies and cranberries bogs. PFAM was designed around the specific parameters that are typically available for a pesticide risk assessment, thereby simplifying the model and allowing the user to concentrate on only the most relevant model inputs. The model considers the fate properties of pesticides and allows for the specifications of typical flooded agriculture management practices such as scheduled water releases and refills. It also allows for natural water-level fluctuations resulting from precipitation and evapotranspiration. Model quality assurance requirements for regulatory models aimed at protecting the public are that the models err on the high side of measured data and at the same time should not cause undue burden to stakeholders by being overly conservative. For the studies herein, PFAM did tend to err on the high side of the data yet provided more realistic estimates than the currently used methods, which thereby reduced stakeholder burden. As is also important for a regulatory model, PFAM is nonproprietary and freely available.     

Fog as a Fresh-Water Resource: Overview and Perspectives

The collection of fog water is a simple and sustainable technology to obtain fresh water for afforestation, gardening, and as a drinking water source for human and animal consumption. In regions where fresh water is sparse and fog frequently occurs, it is feasible to set up a passive mesh system for fog water collection. The mesh is directly exposed to the atmosphere, and the foggy air is pushed through the mesh by the wind. Fog droplets are deposited on the mesh, combine to form larger droplets, and run down passing into a storage tank. Fog water collection rates vary dramatically from site to site but yearly averages from 3 to 10 l m⁻² of mesh per day are typical of operational projects. The scope of this article is to review fog collection projects worldwide, to analyze factors of success, and to evaluate the prospects of this technology.     

Multi-year hourly PM2.5 carbon measurements in New York: Diurnal,day of week and seasonal patterns

Multi-year hourly measurements of PM_2.5 elemental carbon (EC) and organic carbon (OC) from a site in the South Bronx, New York were used to examine diurnal, day of week and seasonal patterns. The hourly carbon measurements also provided temporally resolved information on sporadic EC spikes observed predominantly in winter. Furthermore, hourly EC and OC data were used to provide information on secondary organic aerosol formation. Average monthly EC concentrations ranged from 0.5 to 1.4 μg m^?3 with peak hourly values of several μg m^?3 typically observed from November to March. Mean EC concentrations were lower on weekends (approximately 27% lower on Saturday and 38% lower on Sunday) than on weekdays (Monday to Friday). The weekday/weekend difference was more pronounced during summer months and less noticeable during winter. Throughout the year EC exhibited a similar diurnal pattern to NO_x showing a pronounced peak during the morning commute period (7–10 AM EST). These patterns suggest that EC was impacted by local mobile emissions and in addition by emissions from space heating sources during winter months. Although EC was highly correlated with black carbon (BC) there was a pronounced seasonal BC/EC gradient with summer BC concentrations approximately a factor of 2 higher than EC. Average monthly OC concentrations ranged from 1.0 to 4.1 μg m^?3 with maximum hourly concentrations of 7–11 μg m^?3 predominantly in summer or winter months. OC concentrations generally correlated with PM_2.5 total mass and aerosol sulfate and with NO_x during winter months. OC showed no particular day of week pattern. The OC diurnal pattern was typically different than EC except in winter when OC tracked EC and NO_x indicating local primary emissions contributed significantly to OC during winter at the urban location. On average secondary organic aerosol was estimated to account for 40–50% of OC during winter and up to 63–73% during summer months.     

Dose-response relationships in mutagenicity assays including an appropriate positive control group: a multiple testing approach

The objective of mutagenicity assays in regulatory toxicology is the decision on non-mutagenicity or mutagenicity. An inherent problem of statistical tests is the possibility of false decisions, i.e., a mutagenic substance will be falsely labeled as non-mutagenic or a non-mutagenic substance will be falsely labeled as mutagenic. These probabilities of false negative (consumer's risk=type II error) and/or false positive decision (producer's risk=type I error) can be limited by using suitable testing procedures as well as a design including an appropriate positive control. Using the proof of hazard concept the well-known many-to-one procedures with total order restriction for increasing effect differences are used, while using the proof of safety concept procedures on equivalence with total order restriction are discussed. Both approaches are demonstrated on a real data example.     

Regional and global climate projections increase mid-century yield variability and crop productivity in Belgium

The impact of mid-century climatic changes on crop productivity of winter wheat, maize, potato and sugar beet was assessed for a temperate maritime climate in the Flemish Region, Belgium. Climatic projections of multiple regional and global climate models (RCMs from the EU-ENSEMBLES project and GCMs from the Coupled Model Intercomparison Project phase 3) were stochastically downscaled by the LARS-WG weather generator for use in the crop models AquaCrop and Sirius. Primarily positive effects on mean yield were simulated. Crops benefitted from elevated CO₂, and from more radiation interception if the cropping period was adapted in response to higher temperatures. However, increased productivity was linked with increased susceptibility to water stress and greater inter-annual yield variability, particularly with adapted management. Impacts differed among and within ensembles of climate models, and among crops and environments. Although RCMs may be more suitable for local impact assessments than GCMs, inter-ensemble differences and contingent wider ranges of impacts with GCM projections found in this study indicate that applying RCMs driven by a limited number of GCMs alone would not give the full range of possible impacts. Further, this study suggests that the simulated intermodel variation can be larger than spatial variation within the region. These findings advocate the use of both GCM and RCM ensembles in assessments where temperature and precipitation are central, such as for crop production.